PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01706.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TCP
Protein Properties Length: 302aa    MW: 34290 Da    PI: 9.854
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01706.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.7e-381212623135
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnss 86 
                       +kkdrhski T++g+RdRR+Rls+e+a++fFdLqd LG+dk+s t+eWLl+ ++ ai +l  +s+  +  c           ++ +s++    
  Migut.D01706.1.p 121 KKKDRHSKIETARGPRDRRMRLSLEVARKFFDLQDLLGYDKASRTVEWLLRSSNSAIRDLSVDSNRRS--CstlvtvtggA-AATNSNT---- 206
                       79*************************************************************66666..33244443321.1111111.... PP

               TCP  87 sg........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                        +        +  +++ k+ k++++++  + + +esr kar+rarert++k r++++
  Migut.D01706.1.p 207 -TasstmgeeEVVSNSSKKPKPKAKKKIRSTVPRESRRKARERARERTSQKRRLSTE 262
                       .122234564333333355666666666678999*****************999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-37121257IPR005333Transcription factor, TCP
PROSITE profilePS5136931.995122180IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.059239256IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYIYLDNFFQ FSTINFNNKM NYNNPTNYSS TTDPFPENDI NSTPPFIFPF PNSPHNMEYE  60
YNYDDLQFLD LFSLHQSQSQ SQSSTIILTN MPENSNNQGQ EIHQQIPNST VATTTTTVKK  120
KKKDRHSKIE TARGPRDRRM RLSLEVARKF FDLQDLLGYD KASRTVEWLL RSSNSAIRDL  180
SVDSNRRSCS TLVTVTGGAA ATNSNTTASS TMGEEEVVSN SSKKPKPKAK KKIRSTVPRE  240
SRRKARERAR ERTSQKRRLS TETTVPLTIA QDLSSVLGNS HQNQQIGEFE LCAWDAYNSS  300
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241257RRKARERARERTSQKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853878.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A022QAK11e-164A0A022QAK1_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000145722e-34(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-24TCP domain protein 12